[BioC] Resourcerer, Error in author[["authors"]]

John Zhang jzhang at jimmy.harvard.edu
Tue Jun 7 15:09:21 CEST 2005


It was caused by a bug in AnnBuilder. I will fix that. Thanks.


>X-Original-To: jzhang at jimmy.harvard.edu
>Delivered-To: jzhang at jimmy.harvard.edu
>Date: Tue, 07 Jun 2005 14:37:09 +0200
>From: Morten Mattingsdal <morten.mattingsdal at student.uib.no>
>User-Agent: Mozilla Thunderbird 1.0 (Windows/20041206)
>X-Accept-Language: en-us, en
>MIME-Version: 1.0
>To: bioconductor at stat.math.ethz.ch
>Content-Transfer-Encoding: 7bit
>X-UiO-Spam-info: not spam, SpamAssassin (score=-6.827, required 12, 
autolearn=disabled, ALL_TRUSTED -2.82, AWL 0.99, UIO_MAIL_IS_INTERNAL -5.00)
>Received-SPF: pass (hypatia.math.ethz.ch: 129.132.145.15 is authenticated by a 
trusted mechanism)
>Received-SPF: none (hypatia: domain of morten.mattingsdal at student.uib.no does 
not designate permitted sender hosts)
>X-Virus-Scanned: by amavisd-new at stat.math.ethz.ch
>Subject: [BioC] Resourcerer, Error in author[["authors"]]
>X-BeenThere: bioconductor at stat.math.ethz.ch
>X-Mailman-Version: 2.1.5
>List-Id: The Bioconductor Project Mailing List <bioconductor.stat.math.ethz.ch>
>List-Unsubscribe: <https://stat.ethz.ch/mailman/listinfo/bioconductor>, 
<mailto:bioconductor-request at stat.math.ethz.ch?subject=unsubscribe>
>List-Archive: <https://stat.ethz.ch/pipermail/bioconductor>
>List-Post: <mailto:bioconductor at stat.math.ethz.ch>
>List-Help: <mailto:bioconductor-request at stat.math.ethz.ch?subject=help>
>List-Subscribe: <https://stat.ethz.ch/mailman/listinfo/bioconductor>, 
<mailto:bioconductor-request at stat.math.ethz.ch?subject=subscribe>
>X-Spam-Checker-Version: SpamAssassin 3.0.1 (2004-10-22) on  
pascal.dfci.harvard.edu
>X-Spam-Level: 
>X-Spam-Status: No, score=-2.6 required=3.0 tests=BAYES_00 autolearn=ham  
version=3.0.1
>
>Hello everybody,
>
>I have some trouble with Resourcerer package. I want to convert the
>Agilent_Human1Av2 array to a BioC meta-data package as described in "How to use
>Resourcerer". Everything goes fine (except the kegg errors) until this error:
>
>library(Resourcerer)
>resourcerer2BioC("Agilent_Human1Av2.zip", organism="human",
>destDir=file.path(.path.package("Resourcerer"), "temp"),
>pkgName=("AgilentHuman1Av2"), srcUrls=getSrcUrl("all","Homo sapiens"),
>pkgPath=file.path(.path.package("Resourcerer"),"temp"),
>otherSrc=NULL,baseMapType="gbNRef", version="1.0.0", makeXML=TRUE, 
fromWeb=True,
>baseUrl="ftp://ftp.tigr.org/pub/data/tgi/Resourcerer", check=FALSE,
>author=list(author="Anonymous",maintainer="mortema at medisin.uio"))
>
>
>Error in author[["authors"]] : subscript out of bounds
>[1] "Unsuccessful"
>
>
>I use R 2.1.0 and Resourcerer 1.1.1 on Linux
>
>Cant seem to figure this one out (its seems kinda trivial). Anyone knows what I 
am doing wrong? 
>
>morten
>
>_______________________________________________
>Bioconductor mailing list
>Bioconductor at stat.math.ethz.ch
>https://stat.ethz.ch/mailman/listinfo/bioconductor

Jianhua Zhang
Department of Medical Oncology
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084



More information about the Bioconductor mailing list