[BioC] Affymetrix MASv5 code & sample data
ramasamy at cancer.org.uk
Thu Jun 9 19:45:17 CEST 2005
Thank you for making the source codes available.
While on the subject I like to ask that if there is a documentation
describing how the PLIER algorithm works. I think some sources point to
the main Affymetrix website but I was unable to find it a few weeks
Can you give me the explicit link to a document about PLIER please ?
BTW, the white paper entitled "Statistical Algorithms Description
Document" was pretty good at explaining what MAS 5.0 did and I was
hoping that it might be updated or modified to explain PLIER.
On Wed, 2005-06-08 at 12:52 -0700, Mike Lelivelt wrote:
> Dear Bioconductor Community:
> I wanted to let everyone know that Affymetrix released the source code to
> the MASv5 statistical algorithm several months back. It is licensed under
> the GNU:GPL. You are welcome to access the code at the following URL below.
> This URL also lists our ANSI C++ file parsers under LGPL and the PLIER code
> under a GPL. If our lawyers continue to agree, we should be making more
> contributions to these code bases as well as new code bases under open
> source licenses in the future.
> Also you can find many sample datasets associated with a wide variety of
> Affymetrix arrays at our developers network data resource center, as well
> as links to other sample data sets on our website as well as public data
> sets. Heres a link
> To receive the monthly Affymetrix developer newsletter, register at
> http://www.affymetrix.com and ensure that your profile has specified to
> receive developer network communication.
> Thanks for your continued support and interest, mike
> -- Mike Lelivelt, Ph.D., Senior Manager of Informatics Applications,
> Affymetrix, Inc.
> Mike_lelivelt at affymetrix.com, cell 608-239-6937, office 608-985-6440 msg
> sent from OS X
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Adaikalavan Ramasamy ramasamy at cancer.org.uk
Centre for Statistics in Medicine http://www.ihs.ox.ac.uk/csm/
Wolfson College Annexe Tel : 01865 284 408
Linton Road, Oxford OX2 6UD Fax : 01865 284 424
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