[BioC] table2html problem
Jean Yee Hwa Yang
jean at biostat.ucsf.edu
Wed Jun 15 16:45:36 CEST 2005
You need to use the function "mapGeneInfo" to build a mapping between the
column names of your data.frame object and the website you wanted to map
it to. For example, if you have the following R object "selgene" being a
data frame with the following info:
Name GeneBank SMDID
test AA176741 611425
You can create your own map using:
mymap <- mapGeneInfo(Name="none", GeneBank="genbank", SMDID="SMDclid")
will create a html with the GeneBank column having a hotlink to entrez and
the SMDID column having a hotlink to source.
On Wed, 15 Jun 2005, Giulio Di Giovanni wrote:
> Does anyone know why I'm getting errors trying to build a simple html table
> from my gene list?
> I have cloneIDs, and if I'm not wrong I always wrote
> table2html(selgenes, "genes.html", mapURL = SMDclid)
> to use Stanford Database clone IDs (as actually URLstring command shows..)
> but now I receive
> Error in table2html(geni, "genesUC.html", mapURL = SMDclid) :
> Object "SMDclid" not found
> SMDclid wasn't a valid option ?
> How and where can I link CloneIDs ?
> (BTW I'm just discovering that widget.mapGeneInfo it doesn't work
> anymore... it gives Error in widget.mapGeneInfo(names) : couldn't find
> function "widgetRender"
> thanks a lot
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