[BioC] Saturation in Affy chips

McGee, Monnie mmcgee at mail.smu.edu
Tue Jun 28 20:56:53 CEST 2005

Dear List,

Several papers on analysis of microarrays mention saturation as a problem in some microarrays.  I was wondering what standard practice was regarding detection of saturation (at what intensity level is a probe considered saturated).  Once a probe is labeled as saturated, what is done about it? 

Any references would be appreciated, too.

Thank you,

Monnie McGee, Ph.D.
Assistant Professor
Department of Statistical Science
Southern Methodist University
Ph: 214-768-2462
Fax: 214-768-4035

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