[BioC] affycomp hgu133 assessment error

Ariel Chernomoretz ariel.chernomoretz at crchul.ulaval.ca
Wed Jun 29 18:34:43 CEST 2005


Dear list,

I get the following error when trying to run affycomp on rma expressions of 
the hgu133a spike in experiment,

> s.rma  <-read.newspikein("eset_hgu133a/rma133.csv")
> a.rma  <-assessSpikeIn2(s.rma,method.name="rma")
Performing 3 assessments that will take a few secondsError in 
exprset[-spikein, ] : only 0's may mix with negative subscripts

The command runs smoothly on hgu95a data, though 
Any help would be greatly appreciated
regards,
Ariel./




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Ariel Chernomoretz, Ph.D.
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