[BioC] Problem about Affy
sfalcon at fhcrc.org
Fri Mar 25 16:41:44 CET 2005
"Jufen Zhou" <jfzhou at ucdavis.edu> writes:
> On a Windows XP (SP2) machine, when I use the package Affy (R 2.0.1,
> bioconductor 1.5), the following error message appears:
> Note: You did not specify a download type. Using a default value of:
> This will be fine for almost all users
>  "Attempting to download hgu133plus2cdf from
>  "Download complete."
>  "Installing hgu133plus2cdf"
> Note: Running R version 2.0.1 and package hgu133plus2cdf was built for R
> version 2.0.0
> , installing anyway.
This message is, I believe, separate from the error. It is saying
that the data package hgu133plus2cdf was built with R 2.0.0. It
_should_ work just fine with R 2.0.1.
> Error in library("hgu133plus2cdf", lib.loc
> = "C:/PROGRA~1/R/rw2001/library") :
> There is no package called 'hgu133plus2cdf'
> In addition: Warning messages:
> 1: error -1 in extracting from zip file
> 2: Installation of package hgu133plus2cdf had non-zero exit status in:
> installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce)
I suspect this is library path issue. Can you look and see if the
hgu133plus2cdf package was installed to C:/PROGRA~1/R/rw2001/library
on your machine? If you see a directory there called hgu133plus2cdf,
then it was installed.
If you don't see it, I wonder if you also have a R/rw2000/library
where it did get installed.
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