[BioC] bg.correct.gcrma?

[Zhijin Wu]

Maybe I can include that as an option in the next release.
Currently you can modify the gcrma function, at the last line,
instead of 

return(rma(object,background=FALSE,verbose=verbose))

  change it to 

return(object)

  Then you will get the object before probe level  data are normalized and
converted into gene level expression data.

best,
Jean

On Thu, 5 May 2005, Ann Hess wrote:

> Is it possible to use the command bg.correct.gcrma in BioConductor 1.5 
> with R 2.1?  I would like to examine the background corrected probe values 
> using gcrma.  If this command doesn't work, is there something else that 
> will allow me to perform just the gcrma backgound correction?  I found 
> this command by searching the Bioconductor Mail archives (some correspondence
> about bg.correct.gcrma appeared in 2003).  Even after loading affy
> and gcrma, I can't find any information about the command bg.correct.gcrma...
> 
> > ?bg.correct.gcrma
> No documentation for 'bg.correct.gcrma' in specified packages and 
> libraries:
> you could try 'help.search("bg.correct.gcrma")'
> > help.search("bg.correct.gcrma")
> No help files found with alias or concept or title matching 
> 'bg.correct.gcrma' using
> regular expression matching.
> 
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