[BioC] make own CDF package probelm, error "installed < 2.0.0"

[Liqun He]

Hi,

After I used the command "make.cdf.package(chip.CDF)", it produced a cdf
package subdirectory "chipcdf".  
When I checked the R package installation instruction for Windows, it
required a zipped local file. So, I put the whole subdirectory into a
linux system, and used the command "zip -r chipcdf chipcdf", it produced
the zip file "chipcdf.zip"
Then I used the R window bottom, Packages->Install Packages from local
zipped files, and selected the file chipcdf.zip. It showed the following
without error message.
>install.packages(choose.files('',filters=Filters[c('zip','All'),]),
.libPaths()[1], CRAN = NULL)
updating HTML package descriptions  

Then I was trying to load the package, it gived the error message:
> library(chipcdf)
Error in library(chipcdf) : 'chipcdf' is not a valid package --
installed < 2.0.0? 

I am a beginner here, there must be something wrong with my procedure.
But I don't the right way to do it. Could someone provide a help?

Some web pages say using the function make.cdf.env to create CDF
environment directly.
>Chipcdf=make.cdf.env(chip.CDF)
But I don't known in this case, how should the makeProbePackage command
be used.
I am trying to create the required packages to run the GCRMA?
Could someone help with this?

Thanks a lot!

Kind regards,
Liqun


 




 






-----Original Message-----
From: bioconductor-bounces at stat.math.ethz.ch
[mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of James W.
MacDonald
Sent: Tuesday, May 17, 2005 2:57 PM
To: Liqun He
Cc: bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] make own CDF package probelm, error "installed <
2.0.0"

Liqun He wrote:
>  
> Dear there, 
>  
> I am creating own chip CDF and probe package file with a window R
2.0.1
> version.
>  
> The make.cdf.package works fine, 
> 
>>make.cdf.package(chip.CDF);
> 
> Reading CDF file.
> Creating CDF environment
> Creating package in E:/chipcdf
>  
> I installed this CDF package in R and try to load it to run
> makeProbePackage, and then come the error message,
>  > library(chipcdff)
> Error in library(chipcdf) : 'chipcdf' is not a valid package --
> installed < 2.0.0? 

What exactly did you do to install this package?


>  
> I have tried google, but can not get the right solution. Could any one
> help me to solve the trouble?
> Thanks a lot!
>  
> Kind regards,
> Liqun
>  
> 
> 	[[alternative HTML version deleted]]
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor


-- 
James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623

_______________________________________________
Bioconductor mailing list
Bioconductor at stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/bioconductor