[BioC] AffyProbes abd genome

[Hrishikesh Deshmukh]

Thank you very much sir, just one more question. The
annotation file gives the "region" for each
probeset_Id but is it possible to get the start and
stop cooridnates 
for each of the 16 probes of a probeset_id.
For ex.
ProbeSet_ID| x|y| probeIndex| StartChrLoc| StopCHRLOC
1000_at      1 2  1           42545499     42545524
.
..
...
1001_at.........................
I wonder where can i find this information.

Thankyou very much again.
Hrishi



--- "James W. MacDonald" <jmacdon at med.umich.edu>
wrote:
> Hrishikesh Deshmukh wrote:
> > Pardon my ignorance.
> > How would i get the chromosomal locations written
> to a
> > text file for all the probes on HGU_95Av2. 
> 
> If all you want is the chromosomal locations in a
> text file, I would 
> simply download the annotation file from Affy, and
> delete all the other 
> columns.
> 
>
http://www.affymetrix.com/Auth/analysis/downloads/taf/HG_U95Av2_annot_csv.zip
> 
> This information is in the Genome Alignment column
> of the file.
> 
> Best,
> 
> Jim
> 
> 
> 
> 
> -- 
> James W. MacDonald
> Affymetrix and cDNA Microarray Core
> University of Michigan Cancer Center
> 1500 E. Medical Center Drive
> 7410 CCGC
> Ann Arbor MI 48109
> 734-647-5623
>