[BioC] golubEsets package
jjin at email.unc.edu
Tue Sep 13 16:47:19 CEST 2005
You are correct Jim! That was my problem.
Thanks a lot!
--On Tuesday, September 13, 2005 10:27 AM -0400 "James W. MacDonald"
<jmacdon at med.umich.edu> wrote:
> Jianping Jin wrote:
>> Dear Bioconductor:
>> I got a problem with "golubEsets". The warning message I got was "data
>> set 'golubMerge' not found in: data(golubMerge)". I checked my R
>> version and package information on my Windows XP as below:
> I think the problem is you are trying to load something that is already
> > library(golubEsets)
> Loading required package: Biobase
> Loading required package: tools
> Welcome to Bioconductor
> Vignettes contain introductory material. To view,
> simply type: openVignette()
> For details on reading vignettes, see
> the openVignette help page.
> > golubMerge
> Expression Set (exprSet) with
> 7129 genes
> 72 samples
> phenoData object with 11 variables and 72 cases
> Samples: Sample index
> ALL.AML: Factor, indicating ALL or AML
> BM.PB: Factor, sample from marrow or peripheral blood
> T.B.cell: Factor, T cell or B cell leuk.
> FAB: Factor, FAB classification
> Date: Date sample obtained
> Gender: Factor, gender of patient
> pctBlasts: pct of cells that are blasts
> Treatment: response to treatment
> PS: Prediction strength
> Source: Source of sample
> > data(golubMerge)
> Warning message:
> data set 'golubMerge' not found in: data(golubMerge)
>> R version 2.1.0, 2005-04-18, i386-pc-mingw32
>> attached base packages:
>>  "tools" "methods" "stats" "graphics" "grDevices" "utils"
>>  "base"
>> other attached packages:
>> golubEsets Biobase
>> "1.0" "1.5.12"
>> For certainty, I removed the golubEsets folder under ../R/rw2010/library
>> and re-downloaded the package from the "Experiment data packages for
>> BioC 1.6 (stable) of the bioconductor web site. Install the .zip file
>> through within R. The problem remained the same.
>> I will appreciate it very much if anyone could help to fix the problem!
>> x Jianping Jin Ph.D. x
>> x Bioinformatics scientist x
>> x Center for bioinformatics x
>> x 3133 Bioinformatics Building x
>> x CB# 7104 x
>> x University of North Carolina x
>> x Chapel Hill, NC 27599 x
>> x Tel: (919)843-6105 x
>> x Fax: (919)843-3103 x
>> x E-mail: jjin at email.unc.edu x
>> Bioconductor mailing list
>> Bioconductor at stat.math.ethz.ch
> James W. MacDonald
> Affymetrix and cDNA Microarray Core
> University of Michigan Cancer Center
> 1500 E. Medical Center Drive
> 7410 CCGC
> Ann Arbor MI 48109
x Jianping Jin Ph.D. x
x Bioinformatics scientist x
x Center for bioinformatics x
x 3133 Bioinformatics Building x
x CB# 7104 x
x University of North Carolina x
x Chapel Hill, NC 27599 x
x Tel: (919)843-6105 x
x Fax: (919)843-3103 x
x E-mail: jjin at email.unc.edu x
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