[BioC] GOstats error messages

[John Zhang]

>The second is more serious and I don't know how to correct it. I am using the 
annotation package rat2302 and get "Error: value for 'M18349cds#1_s_at' not 
found". Using options recover I get: 

Looks like you were trying to look up probe id "M18349cds#1_s_at" that does not 
belong to rat2302.



>
>
>Enter a frame number, or 0 to exit   
>
>1: GOHyperG.BP.MF.CC.func(x = unique(LL.vec[200:500]), annot.pckg)
>2: GOHyperG(x, lib = annot.pckg, what = "BP")
>3: sapply(goV, function(x) {
>4: lapply(as.list(X), FUN, ...)
>5: FUN(X[[1]], ...)
>6: unique(unlist(mget(x, getDataEnv("LOCUSID", lib))))
>7: unlist(mget(x, getDataEnv("LOCUSID", lib)))
>8: mget(x, getDataEnv("LOCUSID", lib))
>9: function (x) 
>
>Selection: 9
>Called from: eval(expr, envir, enclos)
>Browse[1]> x
>[1] "M18349cds#1_s_at"
>
>It seems that the annotation package may have an error or something.
>
>Am I doing something wrong? Is there a fix for this?
>
>Thanks,
>
>Mark
>
>
>Mark W. Kimpel MD
> 
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Jianhua Zhang
Department of Medical Oncology
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084