[BioC] convert library for microarrays data

Sébastien Boisvert s at member.fsf.org
Mon Aug 7 20:00:12 CEST 2006


Hi,

I am using a command similar to

R --vanilla < script.R 2> STDERR > STDOUT

to run some scripts. When I include the convert library, some messages go in
STDERR and they are not related to any error.

<code>

[boiseb01 at lw125 ~]$ echo "library(convert)" | R --vanilla 2> STDERR > STDOUT
[boiseb01 at lw125 ~]$ cat STDERR

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

</code>

So I was wondering if this could be changed. Thank you!

[boiseb01 at lw125 ~]$ cat /usr/lib64/R/library/convert/DESCRIPTION  | grep Version
Version: 1.4.0

[boiseb01 at lw125 ~]$ R --version  | grep -i Version
R version 2.3.0 (2006-04-24)

[boiseb01 at lw125 ~]$ uname -rvsmop
Linux 2.6.16-1.2111_FC5 #1 SMP Thu May 4 21:16:04 EDT 2006 x86_64 x86_64
GNU/Linux

Thanks!

-- 
   _      Sébastien Boisvert, bioinformatics student
  °v°     bioinformatician -- Quebec Genomic Center
 /(_)\    www: http://pages.usherbrooke.ca/sebhtml/
  ^ ^     Phone : 1 (418) 525 4444 #46333
          Email : s at member.fsf.org



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