[BioC] convert library for microarrays data

[Henrik Bengtsson]

Agree.  You can catch stderr and stdout in R using sink() and
capture.output() - I think the latter only works for stdout though.

/Henrik

On 8/7/06, Sébastien Boisvert <s at member.fsf.org> wrote:
> Hi,
>
> I am using a command similar to
>
> R --vanilla < script.R 2> STDERR > STDOUT
>
> to run some scripts. When I include the convert library, some messages go in
> STDERR and they are not related to any error.
>
> <code>
>
> [boiseb01 at lw125 ~]$ echo "library(convert)" | R --vanilla 2> STDERR > STDOUT
> [boiseb01 at lw125 ~]$ cat STDERR
>
> Welcome to Bioconductor
>
>     Vignettes contain introductory material. To view, type
>     'openVignette()' or start with 'help(Biobase)'. For details
>     on reading vignettes, see the openVignette help page.
>
> </code>
>
> So I was wondering if this could be changed. Thank you!
>
> [boiseb01 at lw125 ~]$ cat /usr/lib64/R/library/convert/DESCRIPTION  | grep Version
> Version: 1.4.0
>
> [boiseb01 at lw125 ~]$ R --version  | grep -i Version
> R version 2.3.0 (2006-04-24)
>
> [boiseb01 at lw125 ~]$ uname -rvsmop
> Linux 2.6.16-1.2111_FC5 #1 SMP Thu May 4 21:16:04 EDT 2006 x86_64 x86_64
> GNU/Linux
>
> Thanks!
>
> --
>    _      Sébastien Boisvert, bioinformatics student
>   °v°     bioinformatician -- Quebec Genomic Center
>  /(_)\    www: http://pages.usherbrooke.ca/sebhtml/
>   ^ ^     Phone : 1 (418) 525 4444 #46333
>           Email : s at member.fsf.org
>
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