[BioC] Help:How to do normalization with Ambion bioarray data?

Naomi Altman naomi at stat.psu.edu
Fri Dec 8 04:03:40 CET 2006

I am not familiar with Ambion but you could use quantile 
normalization if it seems reasonable.  Also, look to see what methods 
are used for Codelink arrays.


At 01:30 PM 12/7/2006, julin at aecom.yu.edu wrote:
>Dear All:
>Recently I did some Ambion bioarray (one color hybridization), and got
>data of 6 arrays in 3 gpr files(in each gpr file there will be two array
>which being designated as block1 and block 2)from GenePix. I am having
>trouble to normalize my data. Can anyone kindly give me any clue?
>Thanks a lot!
>Qingping Cui
>Albert Einstein Cancer Center
>Bioconductor mailing list
>Bioconductor at stat.math.ethz.ch
>Search the archives: 

Naomi S. Altman                                814-865-3791 (voice)
Associate Professor
Dept. of Statistics                              814-863-7114 (fax)
Penn State University                         814-865-1348 (Statistics)
University Park, PA 16802-2111

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