[BioC] annotation hgu133plus2 problem,

Saurin D. Jani jani at musc.edu
Fri Feb 3 20:21:34 CET 2006


Hi BioC,

When I am trying to get annotations of ALL GENEs on my hgu133plus2 GeneChip.
Please see below output...here my R script is hanging on computer. I am using
Linux 64 bit with 2 GB RAM memory with 45 CEL files.

> AnnTable1 <- aafTableAnn(AllGenes,hgu133plus2,AnnCols[2]);
Loading required package: reposTools
[1] "You have package hgu133plus2 but the incorrect version"
Warning message:
cannot open: HTTP status was '404 Not Found'
Note:
http://www.bioconductor.org/packages/data/annotation/stable/bin/windows/contrib/2.3
does not seem to have a valid repository, skipping
Warning message:
Failed to read replisting at
http://www.bioconductor.org/packages/data/annotation/stable/bin/windows/contrib/2.3
in: getReplisting(repURL, repFile, method = method)
################################################################
Thank you in advance,
Saurin



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