[BioC] AnnBuilder doesn't work on gene information ("GENENAME", "SYMBOL", etc)
nli at fhcrc.org
nli at fhcrc.org
Thu Jul 13 16:04:31 CEST 2006
Sorry, the OS X version of AnnBuilder v1.10.2 is not available yet. We will try
to get it ready as soon as possible. Alternatively, you can download the source
from http://www.bioconductor.org/packages/bioc/1.8/html/AnnBuilder.html and
install it yourself. The modification that matters to you is in
AnnBuilder/R/GP.R .
best
nianhua
Quoting Luo Weijun <luo_weijun at yahoo.com>:
> Thank you so much, Nianhua,
> I think it works now. One more question, You suggested
> me to update AnnBuilder to the lastest version,
> 1.10.1, since The UCSC Genome
> database has updated. But I am not sure exactly how to
> do it. I tried to update AnnBuilder package with
> biocLite('AnnBuilder'), as well as using
> update.packages(repos=biocReposList()) following
> Seth¡¯s suggestion, all I got is still the old
> version, AnnBuilder_1.10.0. Therefore, could you tell
> me how can I update to the lastest AnnBuilder version?
>
> This is my session info after
> update.packages(repos=biocReposList())
>
> > sessionInfo()
> Version 2.3.1 (2006-06-01)
> powerpc-apple-darwin8.6.0
>
> attached base packages:
> [1] "tools" "methods" "stats" "graphics"
> "grDevices" "utils"
> [7] "datasets" "base"
>
> other attached packages:
> AnnBuilder RSQLite DBI annotate XML
> Biobase
> "1.10.0" "0.4-1" "0.1-10" "1.10.0" "0.99-7"
> "1.10.0"
> >
> I really appreciate your help!
> Weijun
>
>
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