[BioC] SNP array packages

[Wittner, Ben, Ph.D.]

For copy number there's an elegant algorithm described in LaFramboise, et al.,
"Allele-Specific Amplification in Cancer Revealed by SNP Array Analysis", PLoS
Computational Biology, 2005.
Tom made an R package implementing it available on his web site,
http://genome.dfci.harvard.edu/~tlaframb/PLASQ
I don't know if he contributed it to BioC.
-Ben

> -----Original Message-----
> From: bioconductor-bounces at stat.math.ethz.ch [mailto:bioconductor-
> bounces at stat.math.ethz.ch] On Behalf Of Natalie Twine
> Sent: Wednesday, March 29, 2006 10:54 AM
> To: bioconductor at stat.math.ethz.ch
> Subject: [BioC] SNP array packages
> 
> Hi
> 
> Does anyone who uses Bioconductor know if there are any new packages
> available  that process SNP microarray data and determine copy number
> and Loss of heterozygosity?
> 
> Thanks
> Natalie Twine
> 
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