[BioC] KEGGSOAP

[Naomi Altman]

Thanks, Seth and Steven.

--Naomi

At 09:02 PM 11/27/2006, Seth Falcon wrote:
>Naomi Altman <naomi at stat.psu.edu> writes:
>
> > Thanks, Seth, but I am still having problems.
> >
> > Firstly, I cannot seem to get out of the Browser.  Some R commands
> > work, but not exit.
>
>As Steven posted, use 'Q' to quit the browser.
>
> > More importantly, I cannot install SSOAP, possibly because it is a
> > tar.gz file, rather than a zip file.  (Yup, I am working on
> > Windows.)
>
>You are correct, no up-to-date Windows binary is currently available.
>We are working on updating the version of SSOAP that is available via
>biocLite.  We expect to have an update available by the end of day
>tomorrow and we'll post to this list when it is available.
>
>Sorry for the inconvenience.
>
> > Regarding versions:
> >
> > I installed R 2.4.0 yesterday, and then installed everything else
> > using the GUI.  However, for KEGGSOAP and SSOAP, I downloaded from
> > BiocLite (which was following a  suggestion from the email archive.
>
>Using biocLite is the recommended way.
>
>+ seth
>
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Naomi S. Altman                                814-865-3791 (voice)
Associate Professor
Dept. of Statistics                              814-863-7114 (fax)
Penn State University                         814-865-1348 (Statistics)
University Park, PA 16802-2111