[BioC] exonmap install problem

Sophie Gallina sfi at good.ibl.fr
Mon Aug 6 17:41:42 CEST 2007


Hi,

I have got this message when installing exonmap on linux :
** building package indices ...
Error in load(zfile, envir = envir) : ReadItem: unknown type 25

I downloaded the file exonmap_1.0.05.tar.gz today from bioconductor site
http://bioconductor.org/packages/2.0/bioc/html/exonmap.html
and try to install it using the command
R CMD INSTALL ./exonmap_1.0.05.tar.gz

================================
Here is the complete trace :
# R CMD INSTALL ./exonmap_1.0.05.tar.gz
* Installing *source* package 'exonmap' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio
Loading required package: simpleaffy
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: genefilter
Loading required package: RColorBrewer
Loading required package: RMySQL
Loading required package: DBI
Loading required package: DBI
Loading required package: plier
PLIER V 1.3.1                                               
      See: http://www.affymetrix.com for the algorithm      
      For details on the R port:                            
      http://bioinformatics.picr.man.ac.uk                  
      mailto: microarray at picr.man.ac.uk                     
** help
 >>> Building/Updating help pages for package 'exonmap'
     Formats: text html latex example
  PC-class                          text    html    latex   example
  Splanova-class                    text    html    latex   example
  X.toY                             text    html    latex   example
  array.subset                      text    html    latex   example
  gene.details                      text    html    latex   example
  gene.legend                       text    html    latex   example
  gene.strip                        text    html    latex   example
  gene.to.exon.probeset             text    html    latex   example
  group.indices                     text    html    latex   example
  pc                                text    html    latex   example
  plot.gene                         text    html    latex   example
  plot.gene.graph                   text    html    latex   example
  probeset.stats                    text    html    latex   example
  probesets.in.range                text    html    latex   example
  read.exon                         text    html    latex   example
  select.probewise                  text    html    latex   example
  splanova                          text    html    latex   example
  splicing.index                    text    html    latex   example
  x.rma                             text    html    latex
  xmapDatabase                      text    html    latex   example
  xmapGene                          text    html    latex   example
** building package indices ...
Error in load(zfile, envir = envir) : ReadItem: unknown type 25
Execution halted
ERROR: installing package indices failed
** Removing '/usr/lib64/R/library/exonmap'
#

-- 
-------------------------------------------------------------------
Sophie.Gallina at good.ibl.fr
CNRS UMR 8090 - http://www-good.ibl.fr
Génomique et physiologie moléculaire des maladies métaboliques
I.B.L - 1 rue du Pr Calmette, B.P.245, 59019 Lille Cedex
Tel : 33 (0)3.20.87.10.71 Fax : 33 (0)3.20.87.10.31



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