[BioC] problem with annbuilder

Francesca francesca.buffa at molecular-medicine.oxford.ac.uk
Thu Jun 21 16:48:59 CEST 2007

Dear all,

I'm trying to run the Annbuilder package to build an annotation file and 
I obtain the message below; any help would be very much appreciated.

thank you in advance


 > myBase <- file.path("/home", "data", "geneNMap")
 > myBaseType <- "gb"
 > mySrcUrls <- getSrcUrl("all", "Homo sapiens")
 > myDir <- c("/home")
 > ABPkgBuilder(baseName = myBase, srcUrls = mySrcUrls, baseMapType = 
myBaseType, pkgName = "Bioc_WG-6_anno", pkgPath = myDir, organism = 
"Homo sapiens", version = "1.1.0",
+ author = list(authors = "FMB", maintainer ="FMB"), fromWeb = T)

Attaching package: 'GO'

        The following object(s) are masked from package:AnnBuilder :


Error in parseKEGGGenome(url = kegggenomeUrl) :
        Faild to obtain KEGG organism code

Dr. Francesca Meteora Buffa, Ph.D.

Weatherall Institute of Molecular Medicine
Cancer Research UK laboratories
University of Oxford
Oxford, OX3 9DS
United Kingdom
E-mail: francesca.buffa at imm.ox.ac.uk
Tel. +44(0)1865 222443
Fax. +44(0)1865 222737

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