[BioC] SNPRMA: Normalizing...Error in readChar(con, 5) : cannot open the connection
alex.lisovich at gmail.com
Sat Jun 23 16:56:01 CEST 2007
I am getting the following error when using snprma() on oligo
v.1.0.2-6 with pd.mapping250k.sty which I believe was once discussed
on the list on June 4, 2007 (see below):
> Normalizing...Error in readChar(con, 5) : cannot open the connection
> In addition: Warning message:
> cannot open compressed file
I am wondering if this problem was solved and if yes what was a solution.
Thank you in advance for your help!
>that's problably R complaining a file that it didn't find. The
>strange thing is that I can't reproduce it here. Could you please
>forward me the results of traceback()?
>This would happen if, for example, oligo finds the old version of the
On Jun 4, 2007, at 8:07 AM, De Bondt, An-7114 [PRDBE] wrote:
>> Hi Ben,
>> When using oligo version 1.0.2-3, the pmStrand function indeed
>> works :-)
>> but the snprma function results in an error:
>> fsetSty <- read.celfiles(dir()[grep("S.CEL", dir())])
>> rmaSty <- snprma(fsetSty)
>> Normalizing...Error in readChar(con, 5) : cannot open the connection
>> In addition: Warning message:
>> cannot open compressed file
>> How can I check which connection needs to be established?
>> Thanks in advance for your help!
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