[BioC] question regarding ncbi gene2accession and annbuilder

Nianhua Li nialicn at yahoo.com
Fri Jun 22 21:30:03 CEST 2007


Hi, Mark,

AnnBuilder retrieves chromosome location data from UCSC Genome Browser. You 
can query UCSC Genome Browser directly or download data from 
http://hgdownload.cse.ucsc.edu/downloads.html 

biomart (BioMart and biomaRt) queries data from Ensembl (along with other 
databases). There are some collaborations between Ensembl and UCSC. I am sure 
others on the list can help you out on this part.

best

nianhua



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