[BioC] AnnBuilder with custmerized GO annotation
xinxia.peng at sbri.org
Tue May 1 07:06:13 CEST 2007
I am trying to reproduce the example given in 'Basic Functions of
AnnBuilder'. Here is what I got for the GO part of the annotation:
[1,] "GO:0004060 at E"
[2,] "GO:0004060 at E"
[5,] "GO:0008320 at NR;GO:0004866 at NR;GO:0006886 at NR"
[8,] "GO:0004060 at E"
What do these after a GO term mean, '@E' or '@NR'?
What I am trying to do is to build an annotation package for GO
enrichment analysis using GOstats. The GO annotation is from
InterProScan. I plan to create a data frame with three columns: probeid,
geneid and GO, then build the annotation package. Any suggestions?
More information about the Bioconductor