[BioC] Is anyone developing an extensible Galaxy-like interface for Bioconductor?
Pierre-Yves
pingou at pingoured.fr
Fri Aug 1 21:58:53 CEST 2008
Deanne Taylor wrote:
> Dear all:
>
> Iis anyone aware of any projects creating an extensible platform that can act as an interface to Bioconductor that could be used to deliver Bioconductor methods to non-command-line-using users?
>
> To save some replies:
>
> * I am aware of limmaGUI and affylmGUI, but the tcl/tk interface is frustrating to some users who have difficulty installing tcl/tk independently while having R recognize it. Macs and some *nix have been particularly problematic for some reasons.
>
> * I am also aware of CARMAweb, bioconductor packages and a few other basic R-web-interfaces, but I would like something more extensible outside of the R framework that could work both in R and in Python/Perl for example. Something more modular.
>
> * I'm thinking something like Galaxy or Bioclipse. I realize Ross Lazarus is working on Rgenetics against Galaxy and Galaxy might be a good solution.
>
> If anyone is aware of other projects (beginning or ongoing or planned) in this area, I'd deeply appreciate getting pointers to them!
I have been pointed not long ago to
http://genomebiology.com/2008/9/7/r118
If that can help.
Regards,
Pierre
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