[BioC] similarity between two gene lists with varied length

[Wolfgang Huber]

>> I am looking for and compare algorithms which can calculate "distance" or
>> "similarity" between two gene lists with different lengths.
>>
>> Any paper, any implementation in R and any suggestion is welcome!
> 

Also, Section 22.4.1. of this book might be of interest:

Gentleman R., Carey V., Huber W., Irizarry R. and Dudoit S. (2005)
Bioinformatics and Computational Biology Solutions Using R and Bioconductor.
Published by Springer.

Best wishes
	Wolfgang
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Wolfgang Huber, EMBL-EBI, http://www.ebi.ac.uk/huber