[BioC] Problems loading SparseM

Heike Pospisil pospisil at zbh.uni-hamburg.de
Mon Aug 25 17:53:41 CEST 2008


Hello,

I am trying to load topGO. SparseM is required by this package. I have 
successfully installed SparseM (version 0.78), but I did not succeed in 
loading the SparseM package into R 2.7. Does anybody know a trick for loading 
SparseM?

Thanks in advance,
Heike


> library(SparseM,lib.loc=my.lib.loc)
Error in packageDescription(pkg)$Version :
  $ operator is invalid for atomic vectors
In addition: Warning message:
In packageDescription(pkg) : no package 'SparseM' was found
Error : .onLoad failed in 'loadNamespace' for 'SparseM'
Error: package/namespace load failed for 'SparseM'


> sessionInfo()
R version 2.7.0 (2008-04-22)
x86_64-unknown-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
[1] AnnotationDbi_1.2.2 RSQLite_0.7-0       DBI_0.2-4
[4] GO_2.0.1            Biobase_2.0.1       graph_1.18.1

loaded via a namespace (and not attached):
[1] cluster_1.11.10 tcltk_2.7.0


-- 
Dr. Heike Pospisil      | pospisil at zbh.uni-hamburg.de
University of Hamburg   | Center for Bioinformatics 
Bundesstrasse 43        | 20146 Hamburg, Germany 
phone:+49-40-42838-7303 | fax: +49-40-42838-7312



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