[BioC] Kegg pathway --> gene network

Elliot Kleiman kleiman at rohan.sdsu.edu
Sun Dec 28 22:44:45 CET 2008

Hi Fraser,

Although KEGGgraph has not yet been
formally released, you may still manually
install it.

First, download it to your local machine
* [ http://www.bioconductor.org/packages/2.4/bioc/html/KEGGgraph.html ]

For example, I am [still] running R version 2.7.2 and I have installed
KEGGgraph, by doing, ...

# must be su (or root) or have sudo permissions
% R CMD INSTALL KEGGgraph_0.8.7.tar.gz

# print-out sessionInfo()
 > sessionInfo()
R version 2.7.2 (2008-08-25)


attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
[1] RBGL_1.18.0      biomaRt_1.14.1   RCurl_0.92-0     Rgraphviz_1.18.1
[5] KEGGgraph_0.8.7  graph_1.20.0     XML_1.98-1

loaded via a namespace (and not attached):
[1] cluster_1.11.11 tools_2.7.2

Hope that helps,

... Elliot

MS graduate student 
Computational Science Program 
San Diego State University

More information about the Bioconductor mailing list