[BioC] Retrieving sequences from NCBI

[Marc Carlson]

Hi,

You can use the biomaRt package to do stuff like this.

http://www.bioconductor.org/packages/2.2/bioc/html/biomaRt.html


    Marc




J. Miguel Marin wrote:
> Dear users,
>
> I do not know whether this is a very simple question but I could not 
> solve by myself...
> I would like to know if there exists in Bioconductor something like 
> the matlab command "getgenbank". It serves to retrieve sequence 
> information from the GenBank database in a simple way, and to download 
> just the sequences to analyze them.
> I have seen the GEOquery and seqinr libraries but I could not download 
> some given mitochondrial sequences.
>
> Best
>
> jm~
>
> _______________________________
>
>        J. Miguel Marin
>
> http://www.est.uc3m.es/jmmarin
>
>    Dep. of Statistics
> University Carlos III of Madrid
>        Spain (E.U.)
>
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