[BioC] Retrieving sequences from NCBI
mcarlson at fhcrc.org
Wed Jul 9 23:09:02 CEST 2008
You can use the biomaRt package to do stuff like this.
J. Miguel Marin wrote:
> Dear users,
> I do not know whether this is a very simple question but I could not
> solve by myself...
> I would like to know if there exists in Bioconductor something like
> the matlab command "getgenbank". It serves to retrieve sequence
> information from the GenBank database in a simple way, and to download
> just the sequences to analyze them.
> I have seen the GEOquery and seqinr libraries but I could not download
> some given mitochondrial sequences.
> J. Miguel Marin
> Dep. of Statistics
> University Carlos III of Madrid
> Spain (E.U.)
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
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