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Mon Jul 14 16:42:33 CEST 2008
On Jul 13, 2008, at 6:58 PM, Mark Cowley wrote:
> There's also MblobR.
> Song, J. S.; Maghsoudi, K.; Li, W.; Fox, E.; Quackenbush, J. & Liu,
> X. S.
> Microarray blob-defect removal improves array analysis.
> Bioinformatics, 2007, 23, 966-971
I just downloaded this to check it out ... have you been using it all?
After downloading all the dependency jars, I realized that it only
opens CEL files saved as version 4 (the binary one), while the files I
have are version 3.
Do you (or anybody else) know if there is an easy way to convert
between versions of CEL files?
 For anybody else who's trying to run this, you'll need to have in
* junit.jar: http://junit.org/
* swing-layout.jar: https://swing-layout.dev.java.net/
 Affy cel version info: http://www.stat.lsa.umich.edu/~kshedden/Courses/Stat545/Notes/AffxFileFormats/cel.html
Graduate Student: Physiology, Biophysics and Systems Biology
Weill Cornell Medical College
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