[BioC] How to objectively evaluate chip quality?
mailinglist.honeypot at gmail.com
Tue Jul 15 19:53:39 CEST 2008
On Jul 15, 2008, at 1:35 PM, simona dalle carbonare wrote:
> I have a question about quality assessment of microarray chips. Can
> suggest me a quantitative metric to evaluate the chips and in
> particular the
> plot about the quality of the chip (for example boxplot of intensity)?
"Quality control through Data Exploration" section of the `affy`
vignette in the `affy` library:
and the `QualityAsses` vignette in the `affyPLM` library:
address QA issues a bit and include several visualizations. Is that
what you had in mind?
Graduate Student: Physiology, Biophysics and Systems Biology
Weill Cornell Medical College
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