[BioC] affy mouse promoter tiling array analysis
nanao at psb.ugent.be
Tue May 6 13:20:41 CEST 2008
I just found out that Mahong Dai proposed some tiling arrays custom cdfs
that can be found here:
The way this CDFs were built is described in this paper:
Hope this will help.
Yanqin Yang wrote:
> I have four CHIP-on-chip datasets on affymetrix mouse promoter 1.0 R array, which are duplicate for both target protein and control group. By using makePlatformDesign and oligo packages, I have successfully read in the *.cel files. Now, I am stuck for the next step. Which package should I use for normalization and further statistic analysis? This is my first time dealing with CHIP-chip tiling array. Would anyone kindly help me out?
> Really appreciate your help!
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