[BioC] affy mouse promoter tiling array analysis

Naira Naouar nanao at psb.ugent.be
Tue May 6 13:20:41 CEST 2008


I just found out that Mahong Dai proposed some tiling arrays custom cdfs 
that can be found here:

The way this CDFs were built is described in this paper:

Hope this will help.

Yanqin Yang wrote:
> Hello,
>   I  have four CHIP-on-chip datasets on affymetrix mouse promoter 1.0 R array, which are duplicate for both target protein and control group. By using makePlatformDesign and oligo packages, I have successfully read in the *.cel files. Now, I am stuck for the next step. Which package should I use for normalization and further statistic analysis? This is my first time dealing with CHIP-chip tiling array. Would anyone kindly help me out?
>   Really appreciate your help!
>   Yanqin  
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Naira Naouar 

Tel:+32 (0)9 331 38 63                      
VIB Department of Plant Systems Biology, Ghent University
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nanao at psb.ugent.be                         http://www.psb.ugent.be

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