[BioC] LIMMA Sort problem

Jenny Drnevich drnevich at illinois.edu
Tue Nov 4 19:55:22 CET 2008

Hi Wang,

In the newest version of limma (limma_2.16.2, 
which needs R 2.8.0), there is now a sort="none" 
option to topTable. Always check the help page for a function - ?topTable.


At 11:17 AM 11/4/2008, Wang, Jixin wrote:
>Dear All, I have one question about the 
>consistence between topTable output with GPR 
>file. In my GPR file, I have several columns 
>containing the annotation information associated 
>with the probes. Can I get differential 
>expression gene list according to GPR file 
>without sort so that I can copy and paste the 
>column gene info from GPR file into 
>toptable?   I don’t want LIMMA to sort out the 
>genes for me.   Many thanks. Best Regards, Wang 
>Bioconductor mailing list 
>Bioconductor at stat.math.ethz.ch 
>Search the archives: 

Jenny Drnevich, Ph.D.

Functional Genomics Bioinformatics Specialist
W.M. Keck Center for Comparative and Functional Genomics
Roy J. Carver Biotechnology Center
University of Illinois, Urbana-Champaign

330 ERML
1201 W. Gregory Dr.
Urbana, IL 61801

ph: 217-244-7355
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e-mail: drnevich at illinois.edu 

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