[BioC] LIMMA Sort problem
jixinwang at neo.tamu.edu
Tue Nov 4 22:05:55 CET 2008
Thanks a lot. I appreciate your kind help. I really need to make efforts on learning R.
----- Original Message -----
From: "Jenny Drnevich" <drnevich at illinois.edu>
To: "Jixin Wang" <jixinwang at neo.tamu.edu>, bioconductor at stat.math.ethz.ch
Sent: Tuesday, November 4, 2008 12:55:22 PM GMT -06:00 US/Canada Central
Subject: Re: [BioC] LIMMA Sort problem
In the newest version of limma (limma_2.16.2,
which needs R 2.8.0), there is now a sort="none"
option to topTable. Always check the help page for a function - ?topTable.
At 11:17 AM 11/4/2008, Wang, Jixin wrote:
>Dear All, I have one question about the
>consistence between topTable output with GPR
>file. In my GPR file, I have several columns
>containing the annotation information associated
>with the probes. Can I get differential
>expression gene list according to GPR file
>without sort so that I can copy and paste the
>column gene info from GPR file into
>toptable? I donâ€™t want LIMMA to sort out the
>genes for me. Many thanks. Best Regards, Wang
>Bioconductor mailing list
>Bioconductor at stat.math.ethz.ch
>Search the archives:
Jenny Drnevich, Ph.D.
Functional Genomics Bioinformatics Specialist
W.M. Keck Center for Comparative and Functional Genomics
Roy J. Carver Biotechnology Center
University of Illinois, Urbana-Champaign
1201 W. Gregory Dr.
Urbana, IL 61801
e-mail: drnevich at illinois.edu
More information about the Bioconductor