[BioC] Help to submission

Richard Pearson richard.pearson at postgrad.manchester.ac.uk
Mon Nov 17 21:02:20 CET 2008


You can get round the size problem by creating a separate data package (I did 
this with puma/pumadata).

You can get round the vignette build problem by providing just the generated pdf 
file, and not the Rnw file.

Best wishes


Droit Arnaud wrote:
> Hello All,
> I am going to create a package for the Bioconductor's submission.
> I have two problems to solve before submitting them :
> First, we have included the CEL and bpmap files in our package. But the size is more than 100 Mo.
> What is the best solution to reduce it? May be, I could make it available on another ftp server?
> Second, the time to run the R CMD check is more than 5 minutes.
> Most of this time is required to build a Sweave vignette.  Can I disable the check command in the Rnw files?
> Thank you
> Arnaud.
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Richard D. Pearson             richard.pearson at postgrad.manchester.ac.uk
School of Computer Science,    http://www.cs.man.ac.uk/~pearsonr
University of Manchester,      Tel: +44 161 275 6178
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