[BioC] hmCEU_YRI_chr22_Foundersfbat.ped file for GeneticsBase

Tiago R Magalhães tiago17 at gmail.com
Sat Nov 29 12:27:10 CET 2008


Dear Martin, Mailing List,

Thank you so much for your prompt reply.

Very embarrassing… The files I was looking for are on the "doc" folder, 
on the GeneticsBase package folder, which lives in the R library folder

I use a Mac MacBook Pro and I had done a find for the file name. I had 
no results. From what I am understanding now the find does not search on 
the library folder. I was unaware of this.

This mailing list and this system is great

Tiago

Martin Morgan wrote:
> Luis F <tiago17 at gmail.com> writes:
>
>   
>> Dear Mailing List,
>>
>> I am looking for the files:
>>
>> hmCEU_YRI_chr22_Foundersfbat.ped
>> hmCEU_YRI_chr22_ALLfbat.ped
>>
>> which are used in the GeneticsBase package and tutorial.
>>
>> I've searched in the Bioconductor data experiment data
>> http://www.bioconductor.org/packages/release/data/experiment/
>> on Greg Warne's page:
>> http://www.warnes.net/GregsSoftwareLinks
>>
>> When I use what's suggested in the tutorial
>> I get an error:
>> Warning: unable to access index for repository
>> http://www.warnes.net/bioc2007/src/contrib
>>
>> I'm very sure these files are under my nose; but I can't get them. Any
>> hints?
>>     
>
> They should be visible at
>
>   
>> list.files(system.file("doc", package="GeneticsBase"), ".*ped$")
>>     
> [1] "hmCEU_YRI_chr22_ALLfbat.ped"      "hmCEU_YRI_chr22_Foundersfbat.ped"
>
> This is with GeneticsBase version 1.8.0, in R version 2.8.0.
>
> Martin
>
>   
>> Thanks,
>> Tiago
>>
>> _______________________________________________
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>> Bioconductor at stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>>     
>
>   


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