[BioC] Lumi and Beadstudio 1.5.13

Leon Peshkin pesha at hms.harvard.edu
Thu Oct 23 08:49:47 CEST 2008


Hi Pan,
    I was wondering if you could help me resolve the issue with lumi  
package,
I am able to load Illumina data with lumiR, but then when I try  
background adjustment
it fails:

  A0 <- lumiR("killme.txt", convertNuID =FALSE, inputAnnotation =FALSE)
 > B0 <- lumiB(A0,method='bgAdjust')
Error in `[.data.frame`(control, , sampleNames(lumiBatch)) :
   undefined columns selected



-Leon



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