[BioC] SNPs data analysis

[Richard Pearson]

Mondher

For CNV analysis you might also want to look at the beadarraySNP package, and 
the paper cited in the vignette for beadarraySNP.

Richard.

Herve Pages wrote:
> Hi Mondher,
> 
> A good start is to read the documentation available in the package.
> For example you can download the PDF files available on this page:
> 
>   http://bioconductor.org/packages/2.3/bioc/html/beadarray.html
> 
> or open them directly from your R session with openVignette() (after you've
> managed to install and load the package). We call these documents 
> vignettes:
> they generally contain examples (with code) on how to use the package. They
> are a great way to learn how to use it. Then when it's time to dive into
> the gory details of how to use a particular function, '?somefuntion'
> is your friend, especially the example section.
> 
> Ask here again if you have a more specific questions about the package.
> 
> Good reading!
> H.
> 
> 
> Mondher GATRI wrote:
>> Dear All,
>>
>> I'm Mondher Gatri, I'm working at EPFL, Switzerland. during my work 
>> I'm dealing with SNPs datasets. I would like to use BeadArray to 
>> normalize BeatStudio SNPs data. Would you please inform me about how 
>> to use beadarray package for normalization, quality control and CNV 
>> computing.
>>
>> Kink regards,
>> Mondher
>>
>>     [[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor at stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> Search the archives: 
>> http://news.gmane.org/gmane.science.biology.informatics.conductor
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: 
> http://news.gmane.org/gmane.science.biology.informatics.conductor
> 

-- 
Richard D. Pearson             richard.pearson at postgrad.manchester.ac.uk
School of Computer Science,    http://www.cs.man.ac.uk/~pearsonr
University of Manchester,      Tel: +44 161 275 6178
Oxford Road,                   Mob: +44 7971 221181
Manchester M13 9PL, UK.        Fax: +44 161 275 6204