[BioC] Query about GO term enrichment

[Robert Gentleman]

Yes, GOstats and topGO will do these things for you.  Both have pretty 
good vignettes and GOstats usage is described in some detail in
http://www.bioconductor.org/pub/biocases/

Sameet Mehta wrote:
> Hi,
> I am not doing any microarray experiments.  However, i still have a set 
> of genes.  Of these according to different criteria a sub-set of genes 
> 'becomes' the interesting set of genes.  The criteria are for me to 
> decide.  Is it possible to to a GO term enrichment on such data.
> I have NCBI GeneIDs for all the genes under study.
> 
> regards
> --sameet
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: 
> http://news.gmane.org/gmane.science.biology.informatics.conductor
> 

-- 
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
PO Box 19024
Seattle, Washington 98109-1024
206-667-7700
rgentlem at fhcrc.org