[BioC] Affymetrix HT HG-U133+ PM Array Plate annotation data
Marc Carlson
mcarlson at fhcrc.org
Fri Dec 18 19:00:08 CET 2009
Hi Giacomo,
We don't presently have an annotation package for that platform. But
fortunately, we have a solution for you. You can use the SQLForge code
in the AnnotationDbi package to just generate a package from an the Affy
probe to gene mapping files (which you can get from their website).
There is a vignette explaining how to do this here:
http://www.bioconductor.org/packages/2.6/bioc/html/AnnotationDbi.html
Please let me know if you have any trouble.
Marc
giacomo.tuana at unimib.it wrote:
> Dear list,
> I found only cdf and probe packages for Affymetrix HT HG-U133+ PM Array
> Plate but there isn't the annotation data package (hthgu133pluspm.db) in
> Bioc 2.5 and in developing Bioc 2.6. It could be released soon?
> Thanks!
> Giacomo Tuana
> --
> Dr. Giacomo Tuana Franguel
> Genopolis Consortium
> University of Milano-Bicocca
> Dept. of Biotechnology and Bioscience/ U4
> Piazza della Scienza 4 20126 Milano, Italy
> http://www.genopolis.it
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>
>
More information about the Bioconductor
mailing list