[BioC] makecdfenv problem

[James W. MacDonald]

Hi Colin,

A sessionInfo() would be helpful, as would the output from

packageDescription("makecdfenv")$V
and
packageDescription("affy")$V

as this works for me:

 > library(makecdfenv)
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

   Vignettes contain introductory material. To view, type
   'openVignette()'. To cite Bioconductor, see
   'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
 > sessionInfo()
R version 2.8.0 (2008-10-20)
i386-pc-mingw32

locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United 
States.1252;LC_MONETARY=English_United 
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252

attached base packages:
[1] tools     stats     graphics  grDevices datasets  utils     methods
[8] base

other attached packages:
[1] makecdfenv_1.20.0 affyio_1.10.0     affy_1.21.6       Biobase_2.2.0

loaded via a namespace (and not attached):
[1] preprocessCore_1.4.0

Best,

Jim



colin clarke wrote:
> Hi all,
> 
> R is returning the following error when attempting to load the makecdfenv
> 
>> library("makecdfenv")
> Error : package 'affy' does not have a name space
> Error in as.environment(pos) :
>   no item called "newtable" on the search list
> Error: package/namespace load failed for 'makecdfenv'
> 
> My version info:
> 
> platform       i386-pc-mingw32
> arch           i386
> os             mingw32
> system         i386, mingw32
> status
> major          2
> minor          8.1
> year           2008
> month          12
> day            22
> svn rev        47281
> language       R
> version.string R version 2.8.1 (2008-12-22)
> 
> Any help would be greatly appriciated,
> 
> Colin
> 
> 	[[alternative HTML version deleted]]
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

-- 
James W. MacDonald, M.S.
Biostatistician
Hildebrandt Lab
8220D MSRB III
1150 W. Medical Center Drive
Ann Arbor MI 48109-0646
734-936-8662