[BioC] Affinity propagation clustering in R

[Laurent Gautier]

Oh, one last thing: there is the following statement in the MATLAB code.

% Copyright (c) Brendan J. Frey and Delbert Dueck (2006). This
% software may be freely used and distributed for
% non-commercial purposes.


L.


Laurent Gautier wrote:
> Peter,

I meant "Peder"


> Since the algorithm is not specific to bioinformatics, you may have more 
> answers by asking about it on the r-help mailing list.
> 
> I also see that the authors provide MATLAB code. Porting it, preferably 
> with the handling of sparse matrices since the package Matrix is 
> becoming a "recommended package" with R-2.8, should also be possible 
> (from a quick glance, the code is looking documented and nicely formatted).
> 
> 
> L.
> 
> 
> Peder Worning wrote:
>> Dear Bioconductor list,
>>
>>  
>>
>> I am working with expression data and wonder if there is an R
>> implementation of the Affinity propagation clustering algorithm
>> published by Frey and Dueck in Science February 2007.
>> Frey and Dueck 2007 Science vol 315, p 972-976
>>
>>  
>>
>> Sincerely yours
>>
>>  
>>
>> Peder Worning
>>
>>  
>>
>> Best regards
>> Exiqon A/S
>>
>>  
>>
>>  
>>
>> Peder Worning, Ph.D.
>>
>>
>>
>>
>> Senior Scientist
>>
>> Biomarker Discovery
>>
>> Telephone: +45 45650457 Telefax: +45 45661888  E-mail: pwo at exiqon.com
>>
>>  
>>
>>  
>> Bygstubben 3 DK-2950 Vedbaek Denmark www.exiqon.com 
>> <http://www.exiqon.com/> 
>> The information transmitted is intended only for the per...{{dropped:14}}
>>
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> 
> 
>