[BioC] problem with the structure of a list of pathways

[Alberto Goldoni]

Dear all,

i have a problem with the package annaffy. As the vignette says i can save an HTML page (example1.html):

anncols <- aaf.handler()[c(1:3, 8:9, 11:13)]
anntable <- aafTableAnn(probeids[1:50], "hgu95av2.db", anncols)
saveHTML(anntable, "example1.html", title = "Example Table without Data")

the HTML page present a list of probes and for each probe you can found many informations like:

1] "Probe" "Symbol" "Description"
[4] "Chromosome" "Chromosome Location" "GenBank"
[7] "Gene" "Cytoband" "UniGene"
[10] "PubMed" "Gene Ontology" "Pathway"


Now it is possible to have a list of pathways and for each pathway to have the probes that have the same pathway?


Best regards.

-----------------------------------------------------
Alberto Goldoni, PhD
IT Lan Manager
Medical Genetics Unit
S. Orsola-Malpighi Hospital
Via Massarenti n.9, Pad 11
40100 Bologna, Italy
Fax: 051-636-4004
alberto.goldoni at eurogene.org
www.eurogene.org
www.lagem.it