[BioC] Installing hthgu133acdf_2.4.0 Was: Re: (no subject)

Saroj K Mohapatra saroj at vt.edu
Sat May 2 18:21:11 CEST 2009


Hi,

I suspect you are having a problem with the proxy server / firewall 
settings at your system.

I was able to install the package without any problem (see below).

Best wishes,

Saroj

 > library("hthgu133acdf")
Error in library("hthgu133acdf") :
  there is no package called 'hthgu133acdf'
 >
 > source("http://www.bioconductor.org/biocLite.R")
 > biocLite("hthgu133acdf")
Running biocinstall version 2.4.10 with R version 2.9.0
Your version of R requires version 2.4 of Bioconductor.
trying URL 
'http://bioconductor.org/packages/2.4/data/annotation/src/contrib/hth
gu133acdf_2.4.0.tar.gz'
Content type 'application/x-gzip' length 1738820 bytes (1.7 Mb)
opened URL
==================================================
downloaded 1.7 Mb

* Installing *source* package ‘hthgu133acdf’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'hthgu133acdf'
     Formats: text html latex example
  geometry                          text    html    latex   example
  hthgu133acdf                      text    html    latex
  hthgu133adim                      text    html    latex
** building package indices ...
* DONE (hthgu133acdf)

The downloaded packages are in
        ‘/tmp/RtmpH6JhO7/downloaded_packages’
Updating HTML index of packages in '.Library'

 > library("hthgu133acdf")


 > sessionInfo()
R version 2.9.0 (2009-04-17)
x86_64-unknown-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_
MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;L
C_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base    

loaded via a namespace (and not attached):
[1] tools_2.9.0



顏厥全 wrote:
> Dear Sir:
>
> I encounter difficulty in downloading hthgu133acdf_2.4.0.zip through
> following R code
> source("http://bioconductor.org/biocLite.R")
> biocLite("hthgu133acdf")
>
> Could you solve this problem? Thanks
>
>
>   



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