[BioC] HilbertVis troubles

Tobias Straub tstraub at med.uni-muenchen.de
Fri May 15 09:53:41 CEST 2009


hi

i want to visualize my tiling array data with HilbertVis and failed  
using the hilbertImage function.
I get a proper plot using plotLongVector but when i call the  
hilbertImage function i get "Error: length(vec) >= newLength is not  
TRUE".
all operations on random data work. so what is wrong with mine?

 > summary(data)
     Min.  1st Qu.   Median     Mean  3rd Qu.     Max.
-1.48800 -0.18810  0.08333  0.48070  1.00400  3.80400
 > mode(data)
[1] "numeric"
 > plotLongVector(data)
 > hMat <- hilbertImage(data)
Error: length(vec) >= newLength is not TRUE
 > sessionInfo()
R version 2.9.0 (2009-04-17)
x86_64-apple-darwin9.6.0

locale:
en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] splines   grid      stats     graphics  grDevices utils      
datasets  methods   base

other attached packages:
  [1] simpleTile_0.1.39    RColorBrewer_1.0-2   tileHMM_1.0-2         
preprocessCore_1.6.0
  [5] affy_1.22.0          locfdr_1.1-6         st_1.1.3              
sda_1.1.0
  [9] fdrtool_1.2.5        corpcor_1.5.2        entropy_1.1.3         
vsn_3.12.0
[13] geneplotter_1.22.0   annotate_1.22.0      AnnotationDbi_1.6.0   
Biobase_2.4.1
[17] gplots_2.7.1         caTools_1.9          bitops_1.0-4.1        
gdata_2.4.2
[21] gtools_2.6.1         HilbertVis_1.2.0     lattice_0.17-22

loaded via a namespace (and not attached):
[1] affyio_1.12.0 DBI_0.2-4     limma_2.18.0  RSQLite_0.7-1  
tools_2.9.0   xtable_1.5-5
 >
----------------------------------------------------------------------
Tobias Straub   ++4989218075439   Adolf-Butenandt-Institute, München D



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