[BioC] affy 10k

[Peter Robinson]

Dear Listers,

I would like to use the oligo package to do genotype calls for the 
affymetrix 10K chip. For some reason, I have not been able to find a 
package like "pd.mapping250k.sty", which is used for the 250K/Sty chip.

In other words, I had used this code for the 250k chip:

 >biocLite("pd.mapping250k.sty")



 >library("oligo")
 >outputDir <- file.path(getwd(), "myGenotype")
 >fullFilenames <- list.files("myDirectory",pattern="CEL$", 
ignore.case="TRUE",full.names=TRUE)
crlmm(fullFilenames, outputDir, verbose = TRUE)


and I am not sure what annotation file to use for the 10K (if in fact 
there is one). Thanks for any tips!
-Peter


-- 
Dr. med. Peter N. Robinson, MSc.
Institut für Medizinische Genetik
Universitätsklinikum Charite
Humboldt-Universität
Augustenburger Platz 1
13353 Berlin
Germany
voice: 49-30-450569124
fax:   49-30-450569915
email: peter.robinson at charite.de
http://compbio.charite.de/
http://www.human-phenotype-ontology.org