[BioC] limmaGUI - venn-diagram & top-table anomaly?

D.Levin at warwick.ac.uk D.Levin at warwick.ac.uk
Sat Sep 5 00:55:28 CEST 2009


In limmaGUI, after running a linear model for a single gene & time point
(mutant vs control), the venn-diagram for differentially expressed genes
with a 0.001 p-value cut-off gives a different number than the top-table with
the same cut-off (2600 vs. 791).

I have seen the same thing happen before for multiple time points (when
the venn-diagram is more relevant)

Any ideas what is going on?



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