[BioC] Problem installing RBGL 1.20.0 using Fedora 11 x64 and gcc 4.4.1

Philipp Antczak PXA437 at bham.ac.uk
Tue Sep 8 14:28:21 CEST 2009


I have a problem compiling and installing RBGL on my Fedora 11 64bit machine.
I have attached the complete output of the R CMD INSTALL command as well as a shortend version here:

[root at Mars Download]# R CMD INSTALL RBGL_1.20.0.tar.gz
* Installing to library \u2018/usr/lib64/R/library\u2019
* Installing *source* package \u2018RBGL\u2019 ...
untarring boost include tree...
** libs
g++ -m64 -I/usr/include/R  -I/usr/local/include   -IboostIncl  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c bbc.cpp -o bbc.o
In file included from boostIncl/boost/mpl/apply.hpp:23,
                 from boostIncl/boost/iterator/iterator_facade.hpp:34,
                 from boostIncl/boost/generator_iterator.hpp:16,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
boostIncl/boost/mpl/apply_wrap.hpp:81:31: error: missing binary operator before token "("
boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary operator before token "("
make: *** [bbc.o] Error 1
ERROR: compilation failed for package \u2018RBGL\u2019
* Removing \u2018/usr/lib64/R/library/RBGL\u2019

It seems that gcc has a problem when using the apply_wrap.hpp file, although I cannot see anything wrong with it.
Any ideas on why this will not compile on my system?


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