[BioC] Bioconductor does not provide Humane gene ST annotation "hugene10stv1cdf" to work with affylmGUI?!

Marc Carlson mcarlson at fhcrc.org
Wed Sep 23 18:38:07 CEST 2009

Hi Olivia,

Have you tried using the makecdfenf package to just generate the cdf
package from the affy source cdf file?


And the Affy source files are here:



Prazeres da Costa Olivia wrote:
> Dear all,
> I would like to use the affylmGUI package to analyze some Affymetrix Human Gene ST arrays. But it seems that Bioconductor does not provide the annotation package hugene10stv1cdf yet - which is needed to work with the affylmGUI library.
> I get the following error message:
> Error in getCdfInfo(object):
> Could not obtain CDF environment, problems encountered:
> Specified environment does not contain GuGene-1_0-st-v1 Library - package hugene10stv1cdf not installed Bioconductor - hugene10stv1cdf not available.
> How can I proceed to work with the affylmGUI package? Is there a "hugene10stv1cdf" annotation package available, and where do I have to install it, so that I can work with the affylmGUI library?
> Thanks for any help!
> Olivia
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