[BioC] Snp matching

[Rhoda Kinsella]

Hi Mohamed,
I've just had a look at the Bioconductor Changelog (http://fgc.lsi.umich.edu/cgi-bin/blosxom.cgi/biomaRt 
) and there is an entry on 14th Jan 2009 that says:

biomaRt
Removed getSNP, getHomolog, getAffyArrays as these functions are  
replaced by getBM and getLDS


So i guess you should try to use getBM or getLDS instead of getSNP.
Regards,
Rhoda


On 29 Sep 2009, at 08:47, Mohamed Lajnef wrote:

> Dear All,
>
> I try to use biomart package to find the snps matching of some genes:
> PPP3CC
> DNMT1
> SMS
> PPIEL
> SAM
> MTHFR
> snpmart = useMart("snp", dataset = "hsapiens_snp")  but getSnp  
> function does not work and i have this message
> Error:"Can not find function "getSNP", Can someone help me to solve  
> this problem?
> Regards
> M
>
>
> -- 
> Mohamed Lajnef
> INSERM Unité 955. 40 rue de Mesly. 94000 Créteil.
> Courriel : Mohamed.lajnef at inserm.fr tel. : 01 49 81 31 31 (poste  
> 18470)
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Rhoda Kinsella Ph.D.
Ensembl Bioinformatician,
European Bioinformatics Institute (EMBL-EBI),
Wellcome Trust Genome Campus,
Hinxton
Cambridge CB10 1SD,
UK.