[BioC] Problem installing RMAGEML

[Md.Mamunur Rashid]

Dear Bioc members,

I ran in to a problem while trying to install RMAGEML package.

/usr/bin/ld: cannot find -ljava .  (please look at the bottom for 
details of the error)

I have set the following in ~/.bashrc file.

export JAVA_HOME=/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64
export LD_LIBRARY_PATH=/home/mamun/R-2.9.0/lib64/R/library/rJava/jri:/home/mamun/R-2.9.0/lib64/R/lib:/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/lib/amd64:/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/lib/amd64/native_threads


My system details:

linux version -  Fedora 11,
java version - java-1.6.0-openjdk-1.6.0.0.x86_64
R-version - 2.9.0



Any suggestion is welcome.

thanks in advance.

regards,
Mamun

Details of the problem :


rmageml.c: In function updateMAGEML:
rmageml.c:599: warning: cast from pointer to integer of different size
gcc -std=gnu99 -shared -L/usr/local/lib64 -o RMAGEML.so rmageml.o
-L/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/jre/lib/amd64
-L/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/jre/lib/i386 -ljava
-L/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/jre/lib/amd64/server
-L/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/jre/lib/i386/client 
-ljvm
-L/home/mamun/R-2.9.0/lib64/R/lib -lR
/usr/bin/ld: cannot find -ljava
collect2: ld returned 1 exit status
make: *** [RMAGEML.so] Error 1
ERROR: compilation failed for package RMAGEML
* Removing /home/mamun/R-2.9.0/lib64/R/library/RMAGEML